STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0983DNA-binding ferritin-like protein (oxidative damage protectant). (183 aa)    
Predicted Functional Partners:
LGAS_0982
Copper chaperone.
 
  
 0.990
LGAS_0984
Crp-like transcriptional regulator.
 
  
 0.938
LGAS_0981
Cation transport ATPase.
 
  
 0.931
LGAS_1887
FNR/CRP family transcriptional regulator.
 
  
 0.637
LGAS_1888
Hypothetical protein.
 
    0.567
LGAS_0985
Acetyltransferase, GNAT family.
     
 0.477
hpf
Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.464
LGAS_0980
Uncharacterized conserved membrane protein; Same as uCOG01554.
       0.462
LGAS_0032
General stress response protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.444
LGAS_1885
Hypothetical protein; Belongs to the HesB/IscA family.
   
    0.433
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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