STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl diphosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (341 aa)    
Predicted Functional Partners:
LGAS_1034
Diphosphomevalonate decarboxylase.
 
  
 0.995
LGAS_1035
Phosphomevalonate kinase.
  
 0.992
LGAS_1033
Mevalonate kinase.
 
  
 0.959
LGAS_0754
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.929
LGAS_1373
3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
   
 0.797
LGAS_1372
hydroxymethylglutaryl-CoA synthase.
 
  
 0.796
dinG
Rad3-related DNA helicase; 3'-5' exonuclease.
  
    0.663
addA
ATP-dependent exoDNAse (exonuclease V) beta subunit; ATP-dependent DNA helicase.
       0.627
rexB
ATP-dependent nuclease, subunit B; ATP-dependent DNA helicase.
       0.627
LGAS_1719
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.624
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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