Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
LGAS_1102Predicted SAM-dependent methyltransferase. (245 aa)    
Predicted Functional Partners:
LGAS_1101
Uncharacterized conserved membrane protein.
 
     0.892
LGAS_0441
Hypothetical protein.
  
     0.755
LGAS_1703
Hypothetical protein.
  
     0.675
LGAS_1706
Hypothetical protein.
  
     0.652
LGAS_1104
Hypothetical protein.
 
     0.649
LGAS_1187
TPR repeat containing protein.
  
     0.634
LGAS_1103
Signal peptidase I; Belongs to the peptidase S26 family.
       0.570
LGAS_0133
Hypothetical protein.
  
     0.547
LGAS_0712
Dipeptidyl-peptidase IV, Serine peptidase, MEROPS family S15; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline.
  
     0.502
LGAS_1700
Guanylate kinase.
  
     0.494
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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