STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1133dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (328 aa)    
Predicted Functional Partners:
LGAS_1134
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 0.999
LGAS_1136
dTDP-glucose 4,6-dehydratase.
 
 0.994
LGAS_1135
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.990
LGAS_1137
Predicted transcriptional regulator.
 
     0.825
LGAS_1138
Abortive infection bacteriophage resistance protein.
       0.549
LGAS_1143
UDP-galactopyranose mutase.
  
  
 0.541
LGAS_0702
UDP-glucose pyrophosphorylase.
    
 0.528
LGAS_1153
Lipopolysaccharide synthesis sugar transferase.
  
  
 0.469
LGAS_1148
Predicted glycosyltransferase.
 
  
 0.458
LGAS_1523
Glycosyl/glycerophosphate transferase.
  
  
 0.456
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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