STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1141Hypothetical protein. (340 aa)    
Predicted Functional Partners:
LGAS_1144
Polysaccharide polymerase.
 
    0.905
LGAS_1142
Polysaccharide Transporter, PST family.
 
   
 0.824
LGAS_1143
UDP-galactopyranose mutase.
     
 0.791
LGAS_1145
Glycosyltransferase related enzyme.
 
     0.658
LGAS_1146
Glycosyltransferase.
  
    0.529
LGAS_1147
Glycosyltransferase.
  
    0.528
LGAS_1148
Predicted glycosyltransferase.
       0.489
LGAS_1149
Glycosyltransferase, family 11.
       0.454
LGAS_0032
General stress response protein; Belongs to the UPF0337 (CsbD) family.
   
    0.436
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.