STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1155Tyrosine-protein kinase (capsular polysaccharide biosynthesis). (257 aa)    
Predicted Functional Partners:
LGAS_1154
Capsular polysaccharide biosynthesis protein.
  
 0.998
LGAS_1156
Capsular polysaccharide biosynthesis protein.
 
 0.995
LGAS_1153
Lipopolysaccharide synthesis sugar transferase.
 
  
 0.957
LGAS_0325
Predicted nucleoside-diphosphate-sugar epimerase.
  
 
 0.877
LGAS_1157
Transcriptional regulator.
  
  
 0.824
LGAS_1151
Glycosyltransferase, family 28.
     
 0.726
LGAS_1152
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.
       0.694
LGAS_0764
Serine/threonine protein kinase with beta-lactam (PASTA) domains.
   
 
 0.592
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
 
 0.590
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
 
 0.535
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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