STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1272Hypothetical protein. (138 aa)    
Predicted Functional Partners:
LGAS_1275
Type II secretory pathway/competence component, ATPase.
  
 
 0.964
LGAS_1274
Type II secretory pathway/competence component.
  
  
 0.961
LGAS_1273
Competence protein ComGC.
  
  
 0.955
LGAS_1271
Hypothetical protein.
  
  
 0.856
LGAS_1174
Predicted hydrolase (metallo-beta-lactamase superfamily).
  
  
 0.762
LGAS_1276
Hypothetical protein.
       0.631
LGAS_1334
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
   
  
 0.631
LGAS_0286
Type II secretory pathway, prepilin signal peptidase PulO related peptidase.
  
  
 0.601
LGAS_1175
DNA uptake protein related DNA-binding protein.
  
  
 0.585
LGAS_0915
Rossmann fold nucleotide-binding protein for DNA uptake.
  
  
 0.572
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.