Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LGAS_1334Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein). (425 aa)    
Predicted Functional Partners:
LGAS_1333
Predicted amidophosphoribosyltransferase.
  
  
 0.966
LGAS_1275
Type II secretory pathway/competence component, ATPase.
   
  
 0.952
LGAS_1175
DNA uptake protein related DNA-binding protein.
   
  
 0.869
LGAS_1273
Competence protein ComGC.
  
  
 0.857
LGAS_0915
Rossmann fold nucleotide-binding protein for DNA uptake.
  
  
 0.792
LGAS_1274
Type II secretory pathway/competence component.
   
  
 0.792
LGAS_1174
Predicted hydrolase (metallo-beta-lactamase superfamily).
   
  
 0.777
hpf
Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
     
 0.756
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.734
LGAS_1335
Hypothetical protein.
     
 0.710
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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