STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1487Phage-related holin. (180 aa)    
Predicted Functional Partners:
LGAS_1485
Predicted phage phi-C31 gp36 major capsid-like protein.
 
    0.868
LGAS_1483
Hypothetical protein.
 
   
 0.822
LGAS_1486
Bacteriophage head-tail adaptor.
  
    0.808
LGAS_1488
Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
       0.791
LGAS_1484
Protease subunit of ATP-dependent Clp protease; Belongs to the peptidase S14 family.
 
    0.742
LGAS_1479
Hypothetical protein.
 
    0.740
LGAS_1481
Hypothetical protein.
 
     0.691
LGAS_1490
Site-specific recombinase, DNA invertase Pin related protein.
 
  
 0.663
LGAS_1491
Site-specific recombinase, DNA invertase Pin related protein.
 
  
 0.619
LGAS_1474
Hypothetical protein.
  
    0.562
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.