Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1502Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. (243 aa)    
Predicted Functional Partners:
LGAS_1500
ABC-type cobalt transport system, ATPase component.
       0.628
LGAS_1501
ABC-type cobalt transport system, permease component CbiQ related transporter.
       0.628
LGAS_1499
Predicted membrane protein.
       0.576
LGAS_1498
Hypothetical protein.
       0.529
LGAS_1503
Ribonucleotide reductase, alpha subunit.
       0.447
LGAS_1506
ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.421
LGAS_1504
Hypothetical protein.
       0.420
LGAS_1505
Predicted membrane protein.
       0.420
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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