Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1671Possible cell surface protein. (2552 aa)    
Predicted Functional Partners:
LGAS_1725
Possible cell surface protein.
 
   
 0.811
LGAS_0843
Hypothetical protein.
 
  
 0.659
LGAS_0912
Periplasmic protease; Belongs to the peptidase S41A family.
 
 
 0.634
LGAS_1344
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.626
LGAS_1877
Transcriptional regulator, xre family.
 
  
 0.574
LGAS_0879
Uncharacterized conserved secreted or membrane protein.
  
     0.530
LGAS_1655
Possible cell surface protein.
  
     0.503
LGAS_1131
Hypothetical protein.
 
  
 0.493
LGAS_0944
Adhesion exoprotein.
 
   
 0.492
LGAS_1670
Transcriptional antiterminator, BglG family.
  
  
 0.471
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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