STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1720ABC-type Mn2+/Zn2+ transport system, permease component. (263 aa)    
Predicted Functional Partners:
LGAS_1721
ABC-type Mn/Zn transport system, ATPase component.
 
 
 0.995
LGAS_1722
ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.973
LGAS_1279
ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.925
rpmG-2
LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.587
rpmG
LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.582
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
     
 0.555
LGAS_1719
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
       0.518
LGAS_1840
ABC-type antimicrobial peptide transport system, ATPase component.
  
  
 0.490
LGAS_1723
Transcriptional regulator, ArsR family.
  
  
 0.441
LGAS_0531
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
  
 
 0.424
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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