STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1830Transcriptional regulator, xre family. (291 aa)    
Predicted Functional Partners:
LGAS_1829
ABC-type multidrug transport system, ATPase and permease component.
 
     0.814
LGAS_1038
ABC-type multidrug transport system, ATPase and permease component.
  
     0.737
LGAS_1037
ABC-type multidrug transport system, ATPase and permease component.
  
     0.720
LGAS_0044
Adhesion exoprotein.
 
     0.694
LGAS_0053
Predicted membrane protein.
 
     0.678
LGAS_1524
Transcriptional regulator, xre family.
  
     0.648
LGAS_0046
Adhesion exoprotein.
 
     0.646
LGAS_0383
Hypothetical protein.
 
  
 0.640
LGAS_0382
Hypothetical protein.
 
  
 0.615
LGAS_1658
Hypothetical protein.
  
    0.604
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.