Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1835PTS system IIC component, Gat family; TC 4.A.5. (438 aa)    
Predicted Functional Partners:
LGAS_1836
PTS system IIC component, Gat family; TC 4.A.5.
 
  
 
0.947
LGAS_1361
Phosphotransferase system, HPr-related protein.
    
  0.905
LGAS_0125
PTS system IIA component, Gat family; TC 4.A.5.
 
  
 0.816
LGAS_0495
PTS system IIA component, Gat family; TC 4.A.5.
 
  
 0.798
LGAS_0149
PTS system fructose-specific EIIABC component family protein; TC 4.A.2.1.8; TC 4.A.2.1.8; TC 4.A.2.1.8.
  
  
 0.481
LGAS_1726
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
  
  
 0.481
LGAS_1837
Predicted periplasmic/secreted protein.
       0.425
LGAS_1833
Predicted membrane protein.
       0.413
LGAS_1834
Predicted membrane protein.
       0.413
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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