Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1877Transcriptional regulator, xre family. (288 aa)    
Predicted Functional Partners:
LGAS_0856
Uncharacterized conserved secreted or membrane protein.
  
     0.728
LGAS_1868
Hypothetical protein.
 
    0.653
LGAS_1627
Predicted membrane protein.
  
     0.622
LGAS_1890
Permease of the major facilitator superfamily.
 
   
 0.597
LGAS_1055
Hypothetical protein.
  
     0.594
LGAS_1671
Possible cell surface protein.
 
  
 0.574
LGAS_1054
Predicted pyrophosphatase.
  
     0.570
LGAS_1262
Predicted integral membrane protein.
  
     0.565
LGAS_0045
Adhesion exoprotein.
  
     0.564
LGAS_0154
Hypothetical protein.
  
     0.553
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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