STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0028KEGG: cch:Cag_0034 hypothetical protein. (228 aa)    
Predicted Functional Partners:
Ppha_0029
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cch:Cag_0035 geranylgeranyl reductase.
 
     0.827
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.780
Ppha_0488
PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; Belongs to the ferrochelatase family.
  
     0.768
Ppha_1876
PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family.
  
     0.764
Ppha_0482
KEGG: cph:Cpha266_0474 hypothetical protein.
  
     0.763
Ppha_2743
KEGG: cph:Cpha266_0192 hypothetical protein.
  
     0.758
Ppha_1504
KEGG: cph:Cpha266_1536 hypothetical protein.
  
     0.736
Ppha_0369
PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_2359 phosphatidate cytidylyltransferase.
  
     0.731
Ppha_1176
Carotene 7,8-desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase.
  
     0.692
Ppha_1769
Carotene 7,8-desaturase; PFAM: amine oxidase; KEGG: cph:Cpha266_0830 zeta-carotene desaturase.
  
     0.688
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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