STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0052PFAM: zinc finger SWIM domain protein; KEGG: cph:Cpha266_1236 zinc finger, SWIM domain protein. (294 aa)    
Predicted Functional Partners:
Ppha_0053
Non-specific serine/threonine protein kinase; KEGG: cph:Cpha266_1235 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases.
    0.994
Ppha_0051
PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein.
       0.547
Ppha_1760
KEGG: cph:Cpha266_0845 alkylhydroperoxidase like protein, AhpD family.
  
     0.544
Ppha_0054
Hypothetical protein.
       0.527
Ppha_0713
KEGG: cph:Cpha266_2243 hypothetical protein.
  
     0.456
Ppha_1977
KEGG: cph:Cpha266_2243 hypothetical protein.
  
     0.456
Ppha_2017
KEGG: cph:Cpha266_2243 hypothetical protein.
  
     0.456
Ppha_2014
KEGG: cph:Cpha266_2243 hypothetical protein.
  
     0.443
Ppha_1253
PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat.
  
     0.420
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.