STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_0086TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cph:Cpha266_2672 ammonium transporter. (444 aa)    
Predicted Functional Partners:
Ppha_0087
PFAM: nitrogen regulatory protein P-II; KEGG: cch:Cag_1998 nitrogen regulatory protein P-II (GlnB, GlnK).
 
 
 0.983
Ppha_1951
PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1535 nitrogen regulatory protein, P-II family; Belongs to the P(II) protein family.
 
 
 0.922
Ppha_1950
PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1344 nitrogen regulatory protein P-II.
 
 
 0.901
Ppha_0781
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: plt:Plut_0502 glutamate synthase (ferredoxin).
 
  
 0.785
Ppha_1956
KEGG: cph:Cpha266_0737 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
   
  
 0.508
Ppha_0085
PFAM: Ferritin Dps family protein; KEGG: cph:Cpha266_2674 ferritin, Dps family protein; Belongs to the Dps family.
       0.444
bchL
Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
  
  
 0.429
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
  
  
 0.429
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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