STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0099PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0756 PHP C-terminal domain protein. (233 aa)    
Predicted Functional Partners:
Ppha_2666
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0245 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.670
Ppha_2388
KEGG: cph:Cpha266_2036 transcriptional regulator, Fis family.
  
     0.617
Ppha_0248
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: cch:Cag_1875 TPR repeat.
  
     0.604
Ppha_0772
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12.
  
    0.560
Ppha_0247
Conserved hypothetical protein; KEGG: gvi:gll1120 unknown protein.
  
     0.551
Ppha_2665
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0246 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.538
Ppha_0098
Hypothetical protein.
       0.515
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.461
Ppha_2149
PFAM: ferredoxin; KEGG: pvi:Cvib_1151 ferredoxin.
  
 
   0.433
Ppha_0671
KEGG: cph:Cpha266_0557 hypothetical protein.
  
     0.421
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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