STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0144PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1217 plasmid stabilization system. (83 aa)    
Predicted Functional Partners:
Ppha_0145
KEGG: cph:Cpha266_1216 hypothetical protein.
 
 
 0.963
Ppha_1179
KEGG: ppd:Ppro_1116 transcriptional regulator, CopG family.
 
 
 0.652
Ppha_2521
KEGG: bbr:BB1689 hypothetical protein.
  
     0.474
Ppha_0146
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cph:Cpha266_0509 transcriptional regulator, BadM/Rrf2 family.
  
    0.470
Ppha_0147
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein.
       0.453
Ppha_2194
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.402
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.