STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Ppha_0146TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cph:Cpha266_0509 transcriptional regulator, BadM/Rrf2 family. (154 aa)    
Predicted Functional Partners:
Ppha_0147
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein.
     
 0.772
Ppha_0830
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_0538 hypothetical protein.
  
     0.764
Ppha_0365
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pvi:Cvib_0301 aminotransferase, class V.
  
  
 0.744
Ppha_0366
PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cph:Cpha266_2362 nitrogen-fixing NifU domain protein.
  
  
 0.685
Ppha_0148
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_1456 TPR repeat-containing protein.
       0.654
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.653
Ppha_0145
KEGG: cph:Cpha266_1216 hypothetical protein.
       0.515
Ppha_0144
PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1217 plasmid stabilization system.
       0.467
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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