STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0148PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_1456 TPR repeat-containing protein. (150 aa)    
Predicted Functional Partners:
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
       0.714
Ppha_1875
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0959 TPR repeat-containing protein.
  
     0.667
Ppha_0147
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein.
       0.664
Ppha_2065
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0709 tetratricopeptide TPR_2 repeat protein.
  
     0.663
Ppha_0146
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cph:Cpha266_0509 transcriptional regulator, BadM/Rrf2 family.
       0.652
Ppha_0635
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters.
 
 
 0.607
Ppha_2421
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_0399 tetratricopeptide TPR_2 repeat protein.
  
     0.578
Ppha_0373
PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat.
  
 0.544
Ppha_1253
PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat.
  
 0.496
Ppha_0641
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein.
 
 
 0.482
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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