STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0159KEGG: gur:Gura_3207 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Ppha_2634
KEGG: cch:Cag_1995 hypothetical protein.
 
     0.754
Ppha_0157
PFAM: DNA polymerase beta domain protein region; KEGG: cch:Cag_0015 hypothetical protein.
       0.574
Ppha_0158
KEGG: cch:Cag_1579 hypothetical protein.
       0.574
Ppha_2635
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cph:Cpha266_0253 putative addiction module component, TIGR02574 family.
  
     0.480
Ppha_2340
TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: cte:CT1521 hypothetical protein.
  
     0.417
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.