STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0192KEGG: gur:Gura_3956 hypothetical protein. (80 aa)    
Predicted Functional Partners:
Ppha_0193
KEGG: gur:Gura_3957 hypothetical protein.
 
     0.936
Ppha_0905
KEGG: rpe:RPE_0295 hypothetical protein.
  
     0.717
Ppha_2375
KEGG: amt:Amet_0300 hypothetical protein.
  
     0.705
Ppha_2659
KEGG: cph:Cpha266_0264 hypothetical protein.
  
     0.674
Ppha_1402
KEGG: cph:Cpha266_1284 hypothetical protein.
  
     0.663
Ppha_2428
KEGG: rfe:RF_0889 hypothetical protein.
  
     0.662
Ppha_0902
KEGG: rfe:RF_0889 hypothetical protein.
  
     0.641
Ppha_0903
KEGG: mar:MAE_20750 hypothetical protein.
  
     0.633
Ppha_1098
KEGG: mar:MAE_20890 hypothetical protein.
  
     0.524
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.458
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.