STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0206PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_2475 ABC transporter related. (222 aa)    
Predicted Functional Partners:
Ppha_0205
PFAM: periplasmic solute binding protein; KEGG: cph:Cpha266_2476 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.999
Ppha_0207
PFAM: ABC-3 protein; KEGG: cch:Cag_1676 ABC 3 transport family protein.
 
 0.999
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
       0.486
Ppha_0101
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0754 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.446
Ppha_2620
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0314 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.446
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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