STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0211KEGG: cph:Cpha266_2467 hypothetical protein. (447 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.798
Ppha_0223
PFAM: von Willebrand factor type A; protein of unknown function DUF58; KEGG: cph:Cpha266_2454 protein of unknown function DUF58.
 
  
 0.798
Ppha_0224
KEGG: cch:Cag_0113 hypothetical protein.
 
     0.722
Ppha_0243
PFAM: von Willebrand factor type A; KEGG: cph:Cpha266_2451 von Willebrand factor, type A.
 
   
 0.720
Ppha_1186
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cph:Cpha266_1021 endonuclease/exonuclease/phosphatase.
  
     0.682
Ppha_0242
PFAM: von Willebrand factor type A; KEGG: cph:Cpha266_2452 von Willebrand factor, type A.
 
   
 0.679
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
  
     0.553
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
 
    0.474
Ppha_0222
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cph:Cpha266_2455 ATPase associated with various cellular activities, AAA_3.
 
   
 0.461
Ppha_0800
PFAM: type II and III secretion system protein; transport-associated; KEGG: pvi:Cvib_0569 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 
 0.428
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.