STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0213PFAM: cytochrome c class I; KEGG: cch:Cag_0917 cytochrome c-555. (111 aa)    
Predicted Functional Partners:
Ppha_0467
PFAM: Cytochrome b/b6 domain; KEGG: cph:Cpha266_0430 cytochrome b/b6, N-terminal domain.
  
 
 0.638
Ppha_2077
PFAM: cytochrome c class I; KEGG: cch:Cag_1358 probable cb-type cytochrome c oxidase subunit III.
 
 
 0.636
Ppha_0807
PFAM: peptidase A24A prepilin type IV; KEGG: pvi:Cvib_0562 peptidase A24A, prepilin type IV; Belongs to the peptidase A24 family.
  
     0.596
Ppha_0011
PFAM: cytochrome c class I; KEGG: cph:Cpha266_0031 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit.
 
 
 
 0.594
Ppha_1059
PFAM: bacteriochlorophyll A protein; KEGG: plt:Plut_1500 bacteriochlorophyll A protein.
    
   0.549
Ppha_2693
KEGG: cch:Cag_0343 photosystem P840 reaction center, large subunit.
    
   0.549
Ppha_2075
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: cch:Cag_1357 cytochrome-c oxidase FixO chain.
 
 
 
 0.546
Ppha_2074
PFAM: cytochrome c oxidase subunit I; KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
   0.540
Ppha_1623
PFAM: ribonuclease BN; KEGG: cph:Cpha266_1653 putative ribonuclease BN.
  
     0.524
Ppha_0214
PFAM: cytochrome c class I; KEGG: cph:Cpha266_2463 cytochrome c, class I.
 
    
0.458
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.