Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_0224KEGG: cch:Cag_0113 hypothetical protein. (297 aa)    
Predicted Functional Partners:
Ppha_0223
PFAM: von Willebrand factor type A; protein of unknown function DUF58; KEGG: cph:Cpha266_2454 protein of unknown function DUF58.
 
    0.759
Ppha_0211
KEGG: cph:Cpha266_2467 hypothetical protein.
 
     0.722
Ppha_0222
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cph:Cpha266_2455 ATPase associated with various cellular activities, AAA_3.
  
    0.586
Ppha_0257
KEGG: cch:Cag_1865 hypothetical protein.
  
     0.537
Ppha_0723
PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein.
  
     0.469
Ppha_2398
KEGG: cph:Cpha266_2043 hypothetical protein.
  
     0.437
Ppha_1322
Hypothetical protein; KEGG: cch:Cag_0916 C-type cytochrome, putative.
  
     0.435
Ppha_1186
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cph:Cpha266_1021 endonuclease/exonuclease/phosphatase.
  
     0.434
Ppha_1477
KEGG: cch:Cag_0916 C-type cytochrome, putative.
  
     0.431
Ppha_1517
KEGG: cph:Cpha266_1093 hypothetical protein.
  
     0.423
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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