Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Ppha_0226PFAM: surface antigen msp4 family protein; KEGG: cph:Cpha266_0396 hypothetical protein. (249 aa)    
Predicted Functional Partners:
pal
TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; Belongs to the Pal lipoprotein family.
  
 
 0.604
Ppha_0410
PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH.
    
 
 0.517
Ppha_1285
KEGG: cph:Cpha266_1757 hypothetical protein.
  
     0.487
Ppha_1284
KEGG: cph:Cpha266_1758 hypothetical protein.
  
     0.446
Ppha_0652
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15).
  
 
 
 0.420
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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