STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0236KEGG: cph:Cpha266_1270 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Ppha_0671
KEGG: cph:Cpha266_0557 hypothetical protein.
  
     0.559
Ppha_1338
PFAM: cytoplasmic chaperone TorD family protein; KEGG: cte:CT0493 hypothetical protein.
  
     0.473
Ppha_0234
KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.471
Ppha_0235
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1356 glycosyl transferase, group 1.
       0.471
Ppha_1990
KEGG: cte:CT1757 hypothetical protein.
  
     0.452
Ppha_0778
KEGG: pvi:Cvib_0555 hypothetical protein.
  
     0.414
Ppha_0247
Conserved hypothetical protein; KEGG: gvi:gll1120 unknown protein.
 
     0.402
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: medium (78%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.