STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0243PFAM: von Willebrand factor type A; KEGG: cph:Cpha266_2451 von Willebrand factor, type A. (343 aa)    
Predicted Functional Partners:
Ppha_0223
PFAM: von Willebrand factor type A; protein of unknown function DUF58; KEGG: cph:Cpha266_2454 protein of unknown function DUF58.
 
   
 0.794
Ppha_0222
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cph:Cpha266_2455 ATPase associated with various cellular activities, AAA_3.
 
     0.774
Ppha_0242
PFAM: von Willebrand factor type A; KEGG: cph:Cpha266_2452 von Willebrand factor, type A.
 
    
0.747
Ppha_0211
KEGG: cph:Cpha266_2467 hypothetical protein.
 
   
 0.720
Ppha_0244
KEGG: cch:Cag_1877 hypothetical protein.
       0.516
Ppha_0241
TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: plt:Plut_1552 thiosulphate-binding protein.
       0.488
Ppha_0245
PFAM: AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2449 AAA ATPase, central domain protein; Belongs to the ClpA/ClpB family.
       0.455
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.