Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_0248PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: cch:Cag_1875 TPR repeat. (793 aa)    
Predicted Functional Partners:
Ppha_0247
Conserved hypothetical protein; KEGG: gvi:gll1120 unknown protein.
 
     0.946
Ppha_2628
KEGG: mul:MUL_3181 hypothetical protein.
  
     0.665
Ppha_0772
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12.
  
     0.654
Ppha_0671
KEGG: cph:Cpha266_0557 hypothetical protein.
  
     0.643
Ppha_2666
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0245 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
     0.641
Ppha_0099
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0756 PHP C-terminal domain protein.
  
     0.604
Ppha_0870
PFAM: pentapeptide repeat protein; KEGG: cte:CT0572 pentapeptide repeat family protein.
  
    0.565
Ppha_1274
SMART: nuclear protein SET; KEGG: plt:Plut_1126 nuclear protein SET.
  
 0.532
Ppha_0249
KEGG: cph:Cpha266_2448 hypothetical protein.
       0.485
Ppha_0373
PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat.
  
 
  0.482
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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