STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0258PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1863 glycosyl transferase, group 1 family protein. (388 aa)    
Predicted Functional Partners:
Ppha_0259
PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_1862 polysaccharide efflux transporter, putative.
  
  
 0.824
Ppha_0260
KEGG: cch:Cag_1857 hypothetical protein.
       0.775
Ppha_0257
KEGG: cch:Cag_1865 hypothetical protein.
       0.773
Ppha_0256
PFAM: glycosyl transferase family 2; KEGG: plt:Plut_0169 glycosyl transferase.
  
    0.706
Ppha_0255
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2442 glycosyl transferase, group 1.
       0.701
Ppha_0987
PFAM: DinB family protein; KEGG: cte:CT1840 hypothetical protein.
  
     0.540
Ppha_0254
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cph:Cpha266_2443 phosphotransferase system, phosphocarrier protein HPr.
       0.529
Ppha_2481
KEGG: cph:Cpha266_2147 hypothetical protein.
  
     0.519
Ppha_0559
PFAM: NAD-dependent epimerase/dehydratase; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase.
  
  
 0.496
obg
GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
    
  0.481
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.