STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0261PFAM: HipA domain protein; KEGG: eca:ECA0127 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Ppha_0262
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein.
 
    0.947
Ppha_0267
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein.
  
    0.778
Ppha_1558
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bpt:Bpet1353 putative DNA-binding protein.
  
    0.778
Ppha_0283
KEGG: gur:Gura_3064 hypothetical protein.
 
     0.776
Ppha_2046
PFAM: HipA domain protein; KEGG: cch:Cag_1275 hypothetical protein.
  
     0.562
Ppha_0263
KEGG: cch:Cag_0509 hypothetical protein.
       0.482
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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