Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppha_0270PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tle:Tlet_1717 radical SAM domain protein. (929 aa)    
Predicted Functional Partners:
Ppha_2731
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0200 radical SAM domain protein.
  
     0.760
Ppha_2757
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB.
  
     0.759
Ppha_0215
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_2462 radical SAM domain protein.
  
     0.758
Ppha_1034
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1895 radical SAM domain protein.
  
     0.758
Ppha_1617
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1644 radical SAM domain protein.
  
     0.747
Ppha_2019
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM domain protein.
  
     0.745
Ppha_0271
PFAM: NUDIX hydrolase; KEGG: chu:CHU_2826 pyrophosphohydrolase related protein.
       0.727
Ppha_0328
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase.
 
  
 0.578
bchB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
    0.468
Ppha_0269
KEGG: sus:Acid_6999 hypothetical protein.
  
    0.407
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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