STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0283KEGG: gur:Gura_3064 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Ppha_0261
PFAM: HipA domain protein; KEGG: eca:ECA0127 hypothetical protein.
 
     0.776
Ppha_0266
PFAM: HipA domain protein; KEGG: hch:HCH_01139 uncharacterized protein related to capsule biosynthesis enzyme.
 
     0.776
Ppha_1557
PFAM: HipA domain protein; KEGG: bxe:Bxe_B2229 hypothetical protein.
 
     0.776
Ppha_1558
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bpt:Bpet1353 putative DNA-binding protein.
  
     0.774
Ppha_2229
PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein.
 
     0.716
Ppha_0848
KEGG: cch:Cag_1290 cell shape determining protein MreB/Mrl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein.
   
 
 0.531
Ppha_1921
PFAM: cell shape determining protein MreB/Mrl; KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl.
   
 
 0.531
Ppha_0659
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: plt:Plut_1641 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.524
Ppha_2224
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cch:Cag_1419 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.524
Ppha_2702
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cph:Cpha266_2541 competence/damage-inducible protein CinA; Belongs to the CinA family.
  
    0.440
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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