node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplC | rplD | Ppha_0289 | Ppha_0290 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplF | Ppha_0289 | Ppha_0304 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
rplC | rplO | Ppha_0289 | Ppha_0308 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
rplC | rplP | Ppha_0289 | Ppha_0296 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplQ | Ppha_0289 | Ppha_0317 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | PFAM: ribosomal protein L17; KEGG: cph:Cpha266_2395 50S ribosomal protein L17. | 0.995 |
rplC | rplX | Ppha_0289 | Ppha_0300 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.995 |
rplC | rpsD | Ppha_0289 | Ppha_0315 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.993 |
rplC | rpsE | Ppha_0289 | Ppha_0306 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.994 |
rplC | rpsM | Ppha_0289 | Ppha_0313 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.994 |
rplC | rpsP | Ppha_0289 | Ppha_1492 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | PFAM: ribosomal protein S16; KEGG: cph:Cpha266_1524 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.990 |
rplD | rplC | Ppha_0290 | Ppha_0289 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
rplD | rplF | Ppha_0290 | Ppha_0304 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.996 |
rplD | rplO | Ppha_0290 | Ppha_0308 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.996 |
rplD | rplP | Ppha_0290 | Ppha_0296 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.997 |
rplD | rplQ | Ppha_0290 | Ppha_0317 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | PFAM: ribosomal protein L17; KEGG: cph:Cpha266_2395 50S ribosomal protein L17. | 0.994 |
rplD | rplX | Ppha_0290 | Ppha_0300 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.996 |
rplD | rpsD | Ppha_0290 | Ppha_0315 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
rplD | rpsE | Ppha_0290 | Ppha_0306 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.998 |
rplD | rpsM | Ppha_0290 | Ppha_0313 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.998 |
rplD | rpsP | Ppha_0290 | Ppha_1492 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | PFAM: ribosomal protein S16; KEGG: cph:Cpha266_1524 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.988 |