STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0329KEGG: cch:Cag_1809 hypothetical protein. (372 aa)    
Predicted Functional Partners:
Ppha_0333
KEGG: cch:Cag_0197 hypothetical protein.
 
     0.860
Ppha_0828
KEGG: cph:Cpha266_1942 hypothetical protein.
  
     0.767
Ppha_0653
KEGG: plt:Plut_1647 hypothetical protein.
  
     0.754
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
  
     0.754
Ppha_0370
PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2358 metallophosphoesterase.
 
     0.752
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
  
     0.748
Ppha_1206
KEGG: cph:Cpha266_1548 hypothetical protein.
  
     0.735
Ppha_0438
PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_0469 polysaccharide biosynthesis protein.
  
     0.714
Ppha_0423
PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cch:Cag_0454 phosphoglucomutase/phosphomannomutase family protein.
  
     0.712
Ppha_0328
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase.
       0.710
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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