Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ppha_0333KEGG: cch:Cag_0197 hypothetical protein. (880 aa)    
Predicted Functional Partners:
Ppha_0329
KEGG: cch:Cag_1809 hypothetical protein.
 
     0.860
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.803
Ppha_0260
KEGG: cch:Cag_1857 hypothetical protein.
  
     0.758
Ppha_0828
KEGG: cph:Cpha266_1942 hypothetical protein.
  
     0.755
Ppha_2332
KEGG: cph:Cpha266_1999 hypothetical protein.
  
     0.752
Ppha_1901
PFAM: permease YjgP/YjgQ family protein; KEGG: pvi:Cvib_1109 permease YjgP/YjgQ family protein.
  
     0.750
Ppha_0410
PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH.
  
     0.748
Ppha_2881
KEGG: cph:Cpha266_2704 putative lipoprotein.
  
     0.728
Ppha_0335
PFAM: ROK family protein; KEGG: pvi:Cvib_0291 ROK family protein.
       0.726
Ppha_0432
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15).
  
     0.725
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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