STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0358KEGG: mar:MAE_48580 hypothetical protein. (58 aa)    
Predicted Functional Partners:
Ppha_2119
KEGG: cch:Cag_1343 hypothetical protein.
 
     0.706
Ppha_1740
KEGG: amr:AM1_1925 hypothetical protein.
  
     0.566
Ppha_2824
KEGG: mar:MAE_61600 predicted nucleic acid-binding protein.
  
     0.562
Ppha_1276
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1078 transcriptional regulator, AbrB family.
  
     0.559
Ppha_0757
KEGG: ajs:Ajs_3020 hypothetical protein.
  
     0.541
Ppha_0162
KEGG: cph:Cpha266_0648 hypothetical protein.
  
     0.516
Ppha_2866
KEGG: ajs:Ajs_3020 hypothetical protein.
  
     0.497
Ppha_2034
KEGG: mar:MAE_40420 hypothetical protein.
  
     0.488
Ppha_2825
KEGG: mar:MAE_46960 hypothetical protein.
  
     0.449
Ppha_0356
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: aby:ABAYE0373 hypothetical protein.
       0.447
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.