Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0388PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1472 glycosyl transferase. (350 aa)    
Predicted Functional Partners:
Ppha_0387
PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0359 glycosyl transferase, group 1.
 
    
0.688
Ppha_2598
PFAM: glycosyl transferase group 1; KEGG: hau:Haur_1032 glycosyl transferase group 1.
  
     0.593
Ppha_0386
PFAM: glycosyl transferase family 9; KEGG: cte:CT0221 heptosyltransferase.
  
  
 0.590
Ppha_0389
PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0692 glycosyl transferase, group 1.
 
    
0.500
Ppha_0259
PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_1862 polysaccharide efflux transporter, putative.
 
  
 0.403
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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