STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0390PFAM: Abortive infection protein; KEGG: plt:Plut_1789 hypothetical protein. (321 aa)    
Predicted Functional Partners:
Ppha_0391
PFAM: phosphatidate cytidylyltransferase; KEGG: cch:Cag_1470 phosphatidate cytidylyltransferase; Belongs to the CDS family.
       0.728
Ppha_0498
KEGG: pvi:Cvib_1472 hypothetical protein.
 
     0.673
Ppha_0511
PFAM: peptidase M50; KEGG: cph:Cpha266_0506 peptidase M50.
 
     0.611
Ppha_2069
TPR repeat; KEGG: cch:Cag_1348 TPR repeat.
  
    0.601
Ppha_0389
PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0692 glycosyl transferase, group 1.
       0.514
Ppha_0392
Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: plt:Plut_1787 putative PTS IIA-like nitrogen-regulatory protein PtsN.
       0.457
Ppha_0867
PFAM: chaperonin Cpn10; KEGG: cch:Cag_1167 chaperonin, 10 kDa.
 
     0.454
Ppha_0482
KEGG: cph:Cpha266_0474 hypothetical protein.
 
    0.451
ispG
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
     0.450
Ppha_2743
KEGG: cph:Cpha266_0192 hypothetical protein.
 
    0.444
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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