STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0420PFAM: PilT protein domain protein; KEGG: mar:MAE_40120 PilT-like protein. (137 aa)    
Predicted Functional Partners:
Ppha_2778
PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1324 hypothetical protein.
 
 
 0.859
Ppha_1096
KEGG: cph:Cpha266_0092 virulence associated protein B.
 
 
 0.849
Ppha_0152
KEGG: rpd:RPD_2062 SpoVT/AbrB-like.
 
 
 0.844
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.774
Ppha_0419
Hypothetical protein.
       0.773
Ppha_0421
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214.
       0.737
Ppha_1048
PFAM: PilT protein domain protein; KEGG: cch:Cag_1777 PIN (PilT N terminus) domain.
  
     0.672
Ppha_0826
KEGG: cph:Cpha266_2641 hypothetical protein.
   
 
 0.424
Ppha_0145
KEGG: cph:Cpha266_1216 hypothetical protein.
 
 
   0.418
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.