STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (91 aa)    
Predicted Functional Partners:
rpmB
PFAM: ribosomal protein L28; KEGG: cph:Cpha266_0582 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.990
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: cph:Cpha266_2488 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.989
Ppha_1031
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.989
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.989
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.976
rpsP
PFAM: ribosomal protein S16; KEGG: cph:Cpha266_1524 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.976
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
 
 0.976
rpsU
PFAM: ribosomal protein S21; KEGG: pvi:Cvib_0348 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.976
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.975
rpsI
PFAM: ribosomal protein S9; KEGG: cph:Cpha266_2011 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.975
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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