STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0446PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like. (885 aa)    
Predicted Functional Partners:
Ppha_2008
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 TPR repeat.
  
 
   0.784
Ppha_1712
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 TPR repeat.
  
 
   0.776
Ppha_1253
PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat.
  
 
  0.760
Ppha_0373
PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat.
  
 
  0.748
Ppha_1241
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3004 TPR repeat protein.
  
 
   0.674
Ppha_0273
SMART: TIR protein; KEGG: fal:FRAAL5311 hypothetical protein; putative transmembrane receptor activity.
 
 
  0.659
Ppha_2873
SEFIR domain protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SEFIR domain protein; SMART: Tetratricopeptide domain protein; KEGG: rru:Rru_A1817 TPR repeat.
  
     0.621
Ppha_0269
KEGG: sus:Acid_6999 hypothetical protein.
  
     0.561
Ppha_0445
KEGG: cph:Cpha266_2281 hypothetical protein.
       0.559
Ppha_2430
Putative signal transduction protein with Nacht domain; PFAM: restriction endonuclease; SMART: AAA ATPase; KEGG: cph:Cpha266_0840 ribosome assembly protein 4 (RSA4).
 
   
 0.547
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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