Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0453PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pmo:Pmob_0755 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family. (605 aa)    
Predicted Functional Partners:
Ppha_1685
5'-Nucleotidase domain protein; PFAM: Alkaline phosphatase; metallophosphoesterase; metalloenzyme domain protein; 5'-Nucleotidase domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: cph:Cpha266_1750 5'-nucleotidase domain protein; Belongs to the alkaline phosphatase family.
 
  
 0.552
Ppha_0454
KEGG: bxe:Bxe_A1213 hypothetical protein.
       0.520
Ppha_1369
DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; KEGG: cph:Cpha266_1031 DNA-directed DNA polymerase.
  
 
 0.504
Ppha_2359
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cph:Cpha266_2016 cell divisionFtsK/SpoIIIE.
  
 
 0.493
Ppha_0761
TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; KEGG: rpe:RPE_3830 outer membrane autotransporter barrel domain.
  
   
 0.491
Ppha_0070
PFAM: peptidase M12A astacin; SMART: peptidase metallopeptidase; KEGG: cph:Cpha266_0056 peptidase M12A, astacin.
  
 
 0.476
Ppha_0587
KEGG: cch:Cag_0645 hypothetical protein.
  
 
 0.476
Ppha_0612
PFAM: legume lectin beta domain; KEGG: dar:Daro_1504 legume lectin, beta domain:protein of unknown function DUF1555.
  
 
 0.476
Ppha_0632
TIGRFAM: outer membrane adhesin like proteiin; KEGG: cph:Cpha266_1846 putative outer membrane adhesin like proteiin.
  
 
 0.476
Ppha_0940
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: cch:Cag_1512 filamentous haemagglutinin-like.
  
 
 0.476
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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