STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0480PFAM: Extracellular ligand-binding receptor; KEGG: cph:Cpha266_1682 extracellular ligand-binding receptor. (407 aa)    
Predicted Functional Partners:
Ppha_0478
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1684 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
Ppha_0479
PFAM: inner-membrane translocator; KEGG: cph:Cpha266_1683 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
Ppha_0477
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1685 ABC transporter related.
 
 
 0.989
Ppha_1828
PFAM: inner-membrane translocator; KEGG: cch:Cag_0851 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.977
Ppha_2015
PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.977
Ppha_1829
PFAM: inner-membrane translocator; KEGG: cch:Cag_0852 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.974
Ppha_2016
PFAM: inner-membrane translocator; KEGG: cpy:Cphy_3535 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.974
Ppha_1827
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0850 ATPase.
 
 
 0.971
Ppha_1826
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0849 ATPase.
 
 
 0.966
Ppha_2024
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cjd:JJD26997_0773 high affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
 
 0.945
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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