STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lolDABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (241 aa)    
Predicted Functional Partners:
Ppha_0421
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214.
 
 0.948
Ppha_0718
PFAM: protein of unknown function DUF214; KEGG: cch:Cag_1781 lipoprotein releasing system.
 
 0.931
Ppha_1636
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214.
 
 0.913
lolD-2
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 
0.909
Ppha_1387
PFAM: protein of unknown function DUF214; KEGG: plt:Plut_1052 hypothetical protein.
  
 0.892
Ppha_1388
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1316 protein of unknown function DUF214.
  
 0.892
Ppha_1637
PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214.
 
 0.854
Ppha_0482
KEGG: cph:Cpha266_0474 hypothetical protein.
       0.638
Ppha_0473
KEGG: cph:Cpha266_0452 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase.
    
0.633
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
  
    0.621
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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