STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0482KEGG: cph:Cpha266_0474 hypothetical protein. (512 aa)    
Predicted Functional Partners:
Ppha_1769
Carotene 7,8-desaturase; PFAM: amine oxidase; KEGG: cph:Cpha266_0830 zeta-carotene desaturase.
  
  
 0.976
Ppha_2151
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_1888 carotenoid isomerase, putative.
 
 
 0.975
Ppha_2256
PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cph:Cpha266_0659 Rieske (2Fe-2S) domain protein.
  
  
 0.961
Ppha_0465
PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase.
  
 
  0.940
Ppha_2743
KEGG: cph:Cpha266_0192 hypothetical protein.
  
  
 
0.902
Ppha_0488
PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; Belongs to the ferrochelatase family.
 
  
 0.778
Ppha_1876
PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; Belongs to the ferrochelatase family.
 
  
 0.778
Ppha_1176
Carotene 7,8-desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase.
  
   
 0.774
Ppha_1504
KEGG: cph:Cpha266_1536 hypothetical protein.
  
  
 0.774
Ppha_0028
KEGG: cch:Cag_0034 hypothetical protein.
  
     0.763
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.