STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_0487TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0480 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (360 aa)    
Predicted Functional Partners:
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.919
Ppha_1637
PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214.
 
 
 0.811
Ppha_1636
PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214.
 
 
 0.802
Ppha_1884
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein.
 
 0.788
Ppha_0066
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0096 outer membrane efflux protein.
 
 0.767
Ppha_2724
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein.
 
 0.736
Ppha_0488
PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; Belongs to the ferrochelatase family.
       0.727
Ppha_1633
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein.
 
 0.721
Ppha_0381
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1746 type I secretion outer membrane protein, TolC family.
 
 0.715
Ppha_0768
PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0620 outer membrane efflux protein.
 
 0.712
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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